Motif IL_22281.1 Version IL_22281.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5V1K_002 | 5V1K | 0.0000 | 0 | A+B | RNA (12-mer) | C | 103 | G | 104 | A | 105 | A | 106 | 5BU | 107||A | * | A | 206 | 5BU | 207 | 8RJ | 208 | A | 209 | G | 210 | cWW | tSH | tWW | cWW | ||
| 2 | IL_8VTW_052 | 8VTW | 0.4153 | 0 | tSH-tHW-tHS (H) | 1A | LSU rRNA | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | U | 1357 | G | 1358 | A | 1359 | A | 1360 | G | 1361 | cWW | tSH | tWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| A(5BU)(8RJ)AG*CGAA(5BU) | 1 |
| CGUAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (5BU)(8RJ)A*GAA | 1 |
| GUA*GAA | 1 |
- Annotations
-
- (1)
- tSH-tHW-tHS (H) (1)
- Basepair signature
- cWW-L-R-tWW-tHS-cWW
- Heat map statistics
- Min 0.42 | Avg 0.21 | Max 0.42
Coloring options: