IL_8T2Y_217

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_217 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.1061

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8T2Y|1|B5|G|1540
8T2Y|1|B5|G|1541
8T2Y|1|B5|G|1542
8T2Y|1|B5|A|1543
8T2Y|1|B5|U|1544
8T2Y|1|B5|A|1545
*
8T2Y|1|B5|U|1566
8T2Y|1|B5|U|1567
8T2Y|1|B5|C|1568
8T2Y|1|B5|A|1569
8T2Y|1|B5|A|1570
8T2Y|1|B5|C|1571

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A