IL_8T2Z_022

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_022 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0566

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8T2Z|1|A1|G|725
8T2Z|1|A1|G|726
8T2Z|1|A1|G|727
8T2Z|1|A1|G|728
*
8T2Z|1|A1|U|741
8T2Z|1|A1|G|742
8T2Z|1|A1|C|743
8T2Z|1|A1|A|744
8T2Z|1|A1|C|745

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L18-A

Chain Ab

RPL29 isoform 1