IL_8T2Z_040

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUA*U(PSU)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_040 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.0912

The information below is about IL_8P9A_269

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8T2Z|1|A1|A|1006
8T2Z|1|A1|U|1007
8T2Z|1|A1|U|1008
8T2Z|1|A1|A|1009
*
8T2Z|1|A1|U|1041
8T2Z|1|A1|PSU|1042
8T2Z|1|A1|C|1043
8T2Z|1|A1|U|1044

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AD

RPL5 isoform 1

Chain AI

RPL10 isoform 1