IL_8T2Z_087
3D structure
- PDB id
- 8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- C(5MC)AAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8T2Z|1|A1|A|2281, 8T2Z|1|A1|C|2287, 8T2Z|1|A1|C|2306
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Z_087 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0869
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8T2Z|1|A1|C|2277
8T2Z|1|A1|5MC|2278
8T2Z|1|A1|A|2279
8T2Z|1|A1|A|2280
8T2Z|1|A1|A|2281
8T2Z|1|A1|U|2282
8T2Z|1|A1|G|2283
8T2Z|1|A1|C|2284
8T2Z|1|A1|C|2285
8T2Z|1|A1|U|2286
8T2Z|1|A1|C|2287
8T2Z|1|A1|G|2288
*
8T2Z|1|A1|C|2304
8T2Z|1|A1|G|2305
8T2Z|1|A1|C|2306
8T2Z|1|A1|G|2307
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain tA
- Transfer RNA; tRNA
Coloring options: