IL_8T2Z_095

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_095 not in the Motif Atlas

Homologous match to IL_8P9A_326

Geometric discrepancy: 0.0894

The information below is about IL_8P9A_326

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

8T2Z|1|A1|C|2666
8T2Z|1|A1|A|2667
8T2Z|1|A1|U|2668
*
8T2Z|1|A1|A|2686
8T2Z|1|A1|G|2687
8T2Z|1|A1|U|2688
8T2Z|1|A1|A|2689
8T2Z|1|A1|G|2690

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AD

RPL5 isoform 1

Chain AJ

RPL11A isoform 1

Chain AT

60S ribosomal protein L21-A