IL_8T2Z_103

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(PSU)C*G(PSU)GAG

Length

8 nucleotides

Bulged bases

8T2Z|1|A1|G|2945, 8T2Z|1|A1|A|2946

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_103 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0395

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8T2Z|1|A1|C|2879
8T2Z|1|A1|PSU|2880
8T2Z|1|A1|C|2881
*
8T2Z|1|A1|G|2943
8T2Z|1|A1|PSU|2944
8T2Z|1|A1|G|2945
8T2Z|1|A1|A|2946
8T2Z|1|A1|G|2947

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A