IL_8T2Z_114

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8T2Z|1|A1|U|3056, 8T2Z|1|A1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_114 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.0708

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8T2Z|1|A1|U|3054
8T2Z|1|A1|U|3055
8T2Z|1|A1|U|3056
8T2Z|1|A1|U|3057
8T2Z|1|A1|U|3058
8T2Z|1|A1|G|3059
*
8T2Z|1|A1|C|3084
8T2Z|1|A1|G|3085
8T2Z|1|A1|A|3086
8T2Z|1|A1|A|3087
8T2Z|1|A1|G|3088

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

RPL24A isoform 1

Chain Ad

60S ribosomal protein L31-A