IL_8T2Z_124

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_124 not in the Motif Atlas

Homologous match to IL_8C3A_134

Geometric discrepancy: 0.1453

The information below is about IL_8C3A_134

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8T2Z|1|A1|C|3235
8T2Z|1|A1|U|3236
8T2Z|1|A1|U|3237
8T2Z|1|A1|G|3238
*
8T2Z|1|A1|C|3249
8T2Z|1|A1|U|3250
8T2Z|1|A1|U|3251
8T2Z|1|A1|G|3252

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L16-A