IL_8T2Z_139

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

8T2Z|1|A3|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_139 not in the Motif Atlas

Homologous match to IL_8C3A_149

Geometric discrepancy: 0.0475

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8T2Z|1|A3|A|84
8T2Z|1|A3|G|85
8T2Z|1|A3|U|86
8T2Z|1|A3|G|87
*
8T2Z|1|A3|C|94
8T2Z|1|A3|A|95
8T2Z|1|A3|U|96

Current chains

Chain A3

5s rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AF

60S ribosomal protein L7-A

Chain AI

RPL10 isoform 1

Chain AS

60S ribosomal protein L20