IL_8T2Z_144

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAA*(PSU)GACAA

Length

11 nucleotides

Bulged bases

8T2Z|1|B5|A|468

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_144 not in the Motif Atlas

Homologous match to IL_8C3A_394

Geometric discrepancy: 0.0833

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8T2Z|1|B5|U|37
8T2Z|1|B5|C|38
8T2Z|1|B5|A|39
8T2Z|1|B5|A|40
8T2Z|1|B5|A|41
*
8T2Z|1|B5|PSU|466
8T2Z|1|B5|G|467
8T2Z|1|B5|A|468
8T2Z|1|B5|C|469
8T2Z|1|B5|A|470
8T2Z|1|B5|A|471

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BJ

40S ribosomal protein S9-A

Chain BY

40S ribosomal protein S24-A