3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUUA*(PSU)UUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T2Z_149 not in the Motif Atlas
Homologous match to IL_8P9A_380
Geometric discrepancy: 0.0662
The information below is about IL_8P9A_380
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

8T2Z|1|B5|G|109
8T2Z|1|B5|U|110
8T2Z|1|B5|U|111
8T2Z|1|B5|A|112
*
8T2Z|1|B5|PSU|302
8T2Z|1|B5|U|303
8T2Z|1|B5|U|304
8T2Z|1|B5|C|305

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BI
40S ribosomal protein S8-A
Chain BL
40S ribosomal protein S11-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3266 s
Application loaded.