IL_8T2Z_179

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_179 not in the Motif Atlas

Homologous match to IL_8C3A_430

Geometric discrepancy: 0.102

The information below is about IL_8C3A_430

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8T2Z|1|B5|A|746
8T2Z|1|B5|C|747
*
8T2Z|1|B5|G|802
8T2Z|1|B5|A|803
8T2Z|1|B5|A|804
8T2Z|1|B5|U|805

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BH

40S ribosomal protein S7-A

Chain BL

40S ribosomal protein S11-A

Chain BW

RPS22A isoform 1

Chain BX

40S ribosomal protein S23-A