3D structure

PDB id
8T2Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAG*UUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T2Z_189 not in the Motif Atlas
Geometric match to IL_4KQ0_004
Geometric discrepancy: 0.1797
The information below is about IL_4KQ0_004
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

8T2Z|1|B5|U|982
8T2Z|1|B5|A|983
8T2Z|1|B5|G|984
*
8T2Z|1|B5|U|1017
8T2Z|1|B5|U|1018
8T2Z|1|B5|A|1019

Current chains

Chain B5
18S rRNA

Nearby chains

Chain A1
Large subunit ribosomal RNA; LSU rRNA
Chain AA
60S ribosomal protein L2-A
Chain Ap
60S ribosomal protein L43-A
Chain BN
40S ribosomal protein S13

Coloring options:


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