IL_8T2Z_209

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_209 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.0893

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8T2Z|1|B5|PSU|1290
8T2Z|1|B5|G|1291
8T2Z|1|B5|G|1292
*
8T2Z|1|B5|C|1323
8T2Z|1|B5|G|1324
8T2Z|1|B5|A|1325

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BC

RPS2 isoform 1

Chain BD

RPS3 isoform 1

Chain BR

40S ribosomal protein S17-A