IL_8T30_026
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8T30|1|A1|A|933, 8T30|1|A1|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T30_026 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0665
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T30|1|A1|G|805
8T30|1|A1|A|806
8T30|1|A1|A|807
8T30|1|A1|A|808
8T30|1|A1|G|809
*
8T30|1|A1|C|931
8T30|1|A1|U|932
8T30|1|A1|A|933
8T30|1|A1|G|934
8T30|1|A1|U|935
8T30|1|A1|A|936
8T30|1|A1|G|937
8T30|1|A1|C|938
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Aj
- 60S ribosomal protein L37-A
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