IL_8T30_034

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T30_034 not in the Motif Atlas

Geometric match to IL_4V88_453

Geometric discrepancy: 0.2188

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8T30|1|A1|A|972
8T30|1|A1|A|973
8T30|1|A1|G|974
*
8T30|1|A1|C|1107
8T30|1|A1|U|1108
8T30|1|A1|U|1109

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L18-A

Chain Ab

RPL29 isoform 1