IL_8T30_096
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T30_096 not in the Motif Atlas
- Homologous match to IL_8P9A_326
- Geometric discrepancy: 0.0859
- The information below is about IL_8P9A_326
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
8T30|1|A1|C|2666
8T30|1|A1|A|2667
8T30|1|A1|U|2668
*
8T30|1|A1|A|2686
8T30|1|A1|G|2687
8T30|1|A1|U|2688
8T30|1|A1|A|2689
8T30|1|A1|G|2690
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- RPL5 isoform 1
- Chain AJ
- RPL11A isoform 1
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: