3D structure

PDB id
8T30 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CAU*AGUAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T30_096 not in the Motif Atlas
Homologous match to IL_8P9A_326
Geometric discrepancy: 0.0859
The information below is about IL_8P9A_326
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_14250.1
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
10

Unit IDs

8T30|1|A1|C|2666
8T30|1|A1|A|2667
8T30|1|A1|U|2668
*
8T30|1|A1|A|2686
8T30|1|A1|G|2687
8T30|1|A1|U|2688
8T30|1|A1|A|2689
8T30|1|A1|G|2690

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A3
5S ribosomal RNA; 5S rRNA
Chain AD
RPL5 isoform 1
Chain AJ
RPL11A isoform 1
Chain AT
60S ribosomal protein L21-A

Coloring options:


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