IL_8T30_099

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGC(PSU)*GA(PSU)UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T30_099 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0926

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8T30|1|A1|G|2823
8T30|1|A1|G|2824
8T30|1|A1|C|2825
8T30|1|A1|PSU|2826
*
8T30|1|A1|G|2863
8T30|1|A1|A|2864
8T30|1|A1|PSU|2865
8T30|1|A1|U|2866
8T30|1|A1|C|2867

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AI

RPL10 isoform 1

Chain Ab

RPL29 isoform 1