IL_8T30_120

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T30_120 not in the Motif Atlas

Homologous match to IL_8P9A_350

Geometric discrepancy: 0.38

The information below is about IL_8P9A_350

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8T30|1|A1|A|3168
8T30|1|A1|U|3169
8T30|1|A1|A|3170
*
8T30|1|A1|U|3280
8T30|1|A1|U|3281
8T30|1|A1|U|3282

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Af

60S ribosomal protein L33-A