IL_8T30_175

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8T30|1|B5|A|579, 8T30|1|B5|U|581, 8T30|1|B5|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T30_175 not in the Motif Atlas

Homologous match to IL_8P9A_404

Geometric discrepancy: 0.2037

The information below is about IL_8P9A_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8T30|1|B5|G|562
8T30|1|B5|U|563
8T30|1|B5|G|564
8T30|1|B5|C|565
8T30|1|B5|C|566
8T30|1|B5|A|567
8T30|1|B5|G|568
*
8T30|1|B5|C|575
8T30|1|B5|G|576
8T30|1|B5|G|577
8T30|1|B5|U|578
8T30|1|B5|A|579
8T30|1|B5|A|580
8T30|1|B5|U|581
8T30|1|B5|U|582
8T30|1|B5|C|583

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A