IL_8T3A_053

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGG*CAC

Length

36 nucleotides

Bulged bases

8T3A|1|A1|A|1231, 8T3A|1|A1|U|1235, 8T3A|1|A1|G|1236, 8T3A|1|A1|G|1237, 8T3A|1|A1|C|1238, 8T3A|1|A1|U|1241, 8T3A|1|A1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3A|1|A1|G|1230
8T3A|1|A1|A|1231
8T3A|1|A1|C|1232
8T3A|1|A1|G|1233
8T3A|1|A1|G|1234
8T3A|1|A1|U|1235
8T3A|1|A1|G|1236
8T3A|1|A1|G|1237
8T3A|1|A1|C|1238
8T3A|1|A1|C|1239
8T3A|1|A1|A|1240
8T3A|1|A1|U|1241
8T3A|1|A1|G|1242
8T3A|1|A1|G|1243
8T3A|1|A1|A|1244
8T3A|1|A1|A|1245
8T3A|1|A1|G|1246
8T3A|1|A1|U|1247
8T3A|1|A1|C|1248
8T3A|1|A1|G|1249
8T3A|1|A1|G|1250
8T3A|1|A1|A|1251
8T3A|1|A1|A|1252
8T3A|1|A1|U|1253
8T3A|1|A1|C|1254
8T3A|1|A1|C|1255
8T3A|1|A1|G|1256
8T3A|1|A1|C|1257
8T3A|1|A1|U|1258
8T3A|1|A1|A|1259
8T3A|1|A1|A|1260
8T3A|1|A1|G|1261
8T3A|1|A1|G|1262
*
8T3A|1|A1|C|1277
8T3A|1|A1|A|1278
8T3A|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains

Chain DC

Elongation factor 2