Loop IL_8T3A

3D structure

PDB id: 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.86 Å

Loop

Sequence: GAGACAUAGAGGGUGUAGAAUAAGUG*CACUACCUUUAUAGUUUC
Length: 44 nucleotides
Bulged bases: 8T3A|1|A1|U|2453, 8T3A|1|A1|A|2458, 8T3A|1|A1|A|2459, 8T3A|1|A1|U|2460, 8T3A|1|A1|A|2461, 8T3A|1|A1|C|2492, 8T3A|1|A1|A|2500, 8T3A|1|A1|U|2501, 8T3A|1|A1|A|2502, 8T3A|1|A1|U|2504
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8T3A|1|A1|G|2440
8T3A|1|A1|A|2441
8T3A|1|A1|G|2442
8T3A|1|A1|A|2443
8T3A|1|A1|C|2444
8T3A|1|A1|A|2445
8T3A|1|A1|U|2446
8T3A|1|A1|A|2447
8T3A|1|A1|G|2448
8T3A|1|A1|A|2449
8T3A|1|A1|G|2450
8T3A|1|A1|G|2451
8T3A|1|A1|G|2452
8T3A|1|A1|U|2453
8T3A|1|A1|G|2454
8T3A|1|A1|U|2455
8T3A|1|A1|A|2456
8T3A|1|A1|G|2457
8T3A|1|A1|A|2458
8T3A|1|A1|A|2459
8T3A|1|A1|U|2460
8T3A|1|A1|A|2461
8T3A|1|A1|A|2462
8T3A|1|A1|G|2463
8T3A|1|A1|U|2464
8T3A|1|A1|G|2465
*
8T3A|1|A1|C|2490
8T3A|1|A1|A|2491
8T3A|1|A1|C|2492
8T3A|1|A1|U|2493
8T3A|1|A1|A|2494
8T3A|1|A1|C|2495
8T3A|1|A1|C|2496
8T3A|1|A1|U|2497
8T3A|1|A1|U|2498
8T3A|1|A1|U|2499
8T3A|1|A1|A|2500
8T3A|1|A1|U|2501
8T3A|1|A1|A|2502
8T3A|1|A1|G|2503
8T3A|1|A1|U|2504
8T3A|1|A1|U|2505
8T3A|1|A1|U|2506
8T3A|1|A1|C|2507

Current chains

Chain A1: 25S rRNA

Nearby chains

Chain Ai: 60S ribosomal protein L36-A
Chain BB: RPS1A isoform 1
Chain E: RPL1A isoform 1
Chain tE: Transfer RNA; tRNA

IL_8T3A_091