IL_8T3A_140
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 8T3A|1|A4|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3A_140 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.1192
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8T3A|1|A4|U|64
8T3A|1|A4|A|65
8T3A|1|A4|A|66
*
8T3A|1|A4|U|93
8T3A|1|A4|C|94
8T3A|1|A4|G|95
8T3A|1|A4|A|96
Current chains
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
Coloring options: