IL_8T3A_145

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3A_145 not in the Motif Atlas

Homologous match to IL_8P9A_377

Geometric discrepancy: 0.1068

The information below is about IL_8P9A_377

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8T3A|1|B5|C|50
8T3A|1|B5|A|51
8T3A|1|B5|U|52
*
8T3A|1|B5|A|428
8T3A|1|B5|G|429

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BY

40S ribosomal protein S24-A

Chain DC

Elongation factor 2