IL_8T3A_191

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8T3A|1|B5|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3A_191 not in the Motif Atlas

Homologous match to IL_8P9A_427

Geometric discrepancy: 0.2951

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8T3A|1|B5|G|1051
8T3A|1|B5|U|1052
8T3A|1|B5|G|1053
*
8T3A|1|B5|C|1066
8T3A|1|B5|C|1067

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BB

RPS1A isoform 1

Chain Bb

40S ribosomal protein S27-A