IL_8T3A_213

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3A_213 not in the Motif Atlas

Homologous match to IL_8P9A_450

Geometric discrepancy: 0.1634

The information below is about IL_8P9A_450

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8T3A|1|B5|C|1495
8T3A|1|B5|U|1496
8T3A|1|B5|U|1497
8T3A|1|B5|G|1498
*
8T3A|1|B5|C|1509
8T3A|1|B5|U|1510
8T3A|1|B5|U|1511
8T3A|1|B5|G|1512

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BT

40S ribosomal protein S19-A