IL_8T3B_016

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

8T3B|1|A1|G|442, 8T3B|1|A1|U|446, 8T3B|1|A1|U|447, 8T3B|1|A1|U|449, 8T3B|1|A1|G|450, 8T3B|1|A1|A|486, 8T3B|1|A1|U|489, 8T3B|1|A1|C|490, 8T3B|1|A1|A|491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|A1|C|435
8T3B|1|A1|A|436
8T3B|1|A1|G|437
8T3B|1|A1|A|438
8T3B|1|A1|C|439
8T3B|1|A1|A|440
8T3B|1|A1|U|441
8T3B|1|A1|G|442
8T3B|1|A1|G|443
8T3B|1|A1|U|444
8T3B|1|A1|G|445
8T3B|1|A1|U|446
8T3B|1|A1|U|447
8T3B|1|A1|U|448
8T3B|1|A1|U|449
8T3B|1|A1|G|450
8T3B|1|A1|U|451
8T3B|1|A1|A|486
8T3B|1|A1|U|487
8T3B|1|A1|U|488
8T3B|1|A1|U|489
8T3B|1|A1|C|490
8T3B|1|A1|A|491
8T3B|1|A1|C|492
8T3B|1|A1|U|493
8T3B|1|A1|G|494
8T3B|1|A1|G|495
*
8T3B|1|A1|C|618
8T3B|1|A1|A|619
8T3B|1|A1|U|620
8T3B|1|A1|A|621
8T3B|1|A1|A|622
8T3B|1|A1|U|623
8T3B|1|A1|G|624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AP

60S ribosomal protein L17-A

Chain Ae

RPL32 isoform 1

Chain Af

60S ribosomal protein L33-A