IL_8T3B_018
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8T3B|1|A1|A|519, 8T3B|1|A1|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3B_018 not in the Motif Atlas
- Homologous match to IL_8P9A_247
- Geometric discrepancy: 0.1269
- The information below is about IL_8P9A_247
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52712.1
- Basepair signature
- cWW-L-R-tHW-tHW-tHW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8T3B|1|A1|G|517
8T3B|1|A1|G|518
8T3B|1|A1|A|519
8T3B|1|A1|U|520
8T3B|1|A1|A|521
8T3B|1|A1|A|522
8T3B|1|A1|A|523
8T3B|1|A1|U|524
8T3B|1|A1|C|525
*
8T3B|1|A1|G|567
8T3B|1|A1|G|568
8T3B|1|A1|A|569
8T3B|1|A1|A|570
8T3B|1|A1|U|571
8T3B|1|A1|A|572
8T3B|1|A1|C|573
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AF
- 60S ribosomal protein L7-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AS
- 60S ribosomal protein L20
Coloring options: