IL_8T3B_051

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UCUAGACAGCC*GGCCGAA

Length

18 nucleotides

Bulged bases

8T3B|1|A1|U|1220, 8T3B|1|A1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|A1|U|1218
8T3B|1|A1|C|1219
8T3B|1|A1|U|1220
8T3B|1|A1|A|1221
8T3B|1|A1|G|1222
8T3B|1|A1|A|1223
8T3B|1|A1|C|1224
8T3B|1|A1|A|1225
8T3B|1|A1|G|1226
8T3B|1|A1|C|1227
8T3B|1|A1|C|1228
*
8T3B|1|A1|G|1281
8T3B|1|A1|G|1282
8T3B|1|A1|C|1283
8T3B|1|A1|C|1284
8T3B|1|A1|G|1285
8T3B|1|A1|A|1286
8T3B|1|A1|A|1287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AS

60S ribosomal protein L20

Chain Am

Ubiquitin-60S ribosomal protein L40