IL_8T3B_053

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8T3B|1|A1|A|1263, 8T3B|1|A1|G|1264

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3B_053 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.2765

The information below is about IL_8UO6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8T3B|1|A1|G|1262
8T3B|1|A1|A|1263
8T3B|1|A1|G|1264
8T3B|1|A1|U|1265
8T3B|1|A1|G|1266
*
8T3B|1|A1|C|1275
8T3B|1|A1|U|1276
8T3B|1|A1|C|1277

Current chains

Chain A1

25S rRNA

Nearby chains