IL_8T3B_152
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UAUAAGC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3B_152 not in the Motif Atlas
- Geometric match to IL_1M5K_001
- Geometric discrepancy: 0.3927
- The information below is about IL_1M5K_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.1
- Basepair signature
- cWW-cWW-L-R-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8T3B|1|B5|U|64
8T3B|1|B5|A|65
8T3B|1|B5|U|66
8T3B|1|B5|A|67
8T3B|1|B5|A|68
8T3B|1|B5|G|69
8T3B|1|B5|C|70
*
8T3B|1|B5|G|81
8T3B|1|B5|U|82
8T3B|1|B5|G|83
8T3B|1|B5|A|84
8T3B|1|B5|A|85
8T3B|1|B5|A|86
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BG
- 40S ribosomal protein S6-A
- Chain BY
- 40S ribosomal protein S24-A
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