IL_8T3B_170

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AUACAGGGCC*GGUCUUGUAAU

Length

21 nucleotides

Bulged bases

8T3B|1|B5|G|498, 8T3B|1|B5|C|500, 8T3B|1|B5|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|B5|A|481
8T3B|1|B5|U|482
8T3B|1|B5|A|483
8T3B|1|B5|C|484
8T3B|1|B5|A|485
8T3B|1|B5|G|486
8T3B|1|B5|G|487
8T3B|1|B5|G|488
8T3B|1|B5|C|489
8T3B|1|B5|C|490
*
8T3B|1|B5|G|497
8T3B|1|B5|G|498
8T3B|1|B5|U|499
8T3B|1|B5|C|500
8T3B|1|B5|U|501
8T3B|1|B5|U|502
8T3B|1|B5|G|503
8T3B|1|B5|U|504
8T3B|1|B5|A|505
8T3B|1|B5|A|506
8T3B|1|B5|U|507

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A