IL_8T3B_203

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CA*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3B_203 not in the Motif Atlas

Geometric match to IL_8C3A_091

Geometric discrepancy: 0.1867

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8T3B|1|B5|C|1210
8T3B|1|B5|A|1211
*
8T3B|1|B5|U|1452
8T3B|1|B5|G|1453
8T3B|1|B5|G|1454

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

RPS15 isoform 1

Chain BS

40S ribosomal protein S18-A

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31