IL_8T3B_236

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGUAUUGGUUACCCAUC*GUAAGGCUUUCA

Length

29 nucleotides

Bulged bases

8T3B|1|EC|U|6770, 8T3B|1|EC|U|6771, 8T3B|1|EC|U|6774, 8T3B|1|EC|C|6777, 8T3B|1|EC|C|6778, 8T3B|1|EC|U|6821, 8T3B|1|EC|U|6822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|EC|U|6766
8T3B|1|EC|G|6767
8T3B|1|EC|U|6768
8T3B|1|EC|A|6769
8T3B|1|EC|U|6770
8T3B|1|EC|U|6771
8T3B|1|EC|G|6772
8T3B|1|EC|G|6773
8T3B|1|EC|U|6774
8T3B|1|EC|U|6775
8T3B|1|EC|A|6776
8T3B|1|EC|C|6777
8T3B|1|EC|C|6778
8T3B|1|EC|C|6779
8T3B|1|EC|A|6780
8T3B|1|EC|U|6781
8T3B|1|EC|C|6782
*
8T3B|1|EC|G|6814
8T3B|1|EC|U|6815
8T3B|1|EC|A|6816
8T3B|1|EC|A|6817
8T3B|1|EC|G|6818
8T3B|1|EC|G|6819
8T3B|1|EC|C|6820
8T3B|1|EC|U|6821
8T3B|1|EC|U|6822
8T3B|1|EC|U|6823
8T3B|1|EC|C|6824
8T3B|1|EC|A|6825

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1