Loop IL_8T3C

3D structure

PDB id: 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.86 Å

Loop

Sequence: CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG
Length: 34 nucleotides
Bulged bases: 8T3C|1|A1|G|442, 8T3C|1|A1|U|444, 8T3C|1|A1|G|445, 8T3C|1|A1|U|446, 8T3C|1|A1|U|447, 8T3C|1|A1|U|449, 8T3C|1|A1|G|450, 8T3C|1|A1|A|486, 8T3C|1|A1|U|488, 8T3C|1|A1|C|490, 8T3C|1|A1|A|491, 8T3C|1|A1|C|492
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8T3C|1|A1|C|435
8T3C|1|A1|A|436
8T3C|1|A1|G|437
8T3C|1|A1|A|438
8T3C|1|A1|C|439
8T3C|1|A1|A|440
8T3C|1|A1|U|441
8T3C|1|A1|G|442
8T3C|1|A1|G|443
8T3C|1|A1|U|444
8T3C|1|A1|G|445
8T3C|1|A1|U|446
8T3C|1|A1|U|447
8T3C|1|A1|U|448
8T3C|1|A1|U|449
8T3C|1|A1|G|450
8T3C|1|A1|U|451
8T3C|1|A1|A|486
8T3C|1|A1|U|487
8T3C|1|A1|U|488
8T3C|1|A1|U|489
8T3C|1|A1|C|490
8T3C|1|A1|A|491
8T3C|1|A1|C|492
8T3C|1|A1|U|493
8T3C|1|A1|G|494
8T3C|1|A1|G|495
*
8T3C|1|A1|C|618
8T3C|1|A1|A|619
8T3C|1|A1|U|620
8T3C|1|A1|A|621
8T3C|1|A1|A|622
8T3C|1|A1|U|623
8T3C|1|A1|G|624

Current chains

Chain A1: 25S rRNA

Nearby chains

Chain AE: 60S ribosomal protein L6-A
Chain AP: 60S ribosomal protein L17-A
Chain Ae: RPL32 isoform 1
Chain Af: 60S ribosomal protein L33-A

IL_8T3C_017