IL_8T3C_072

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAUAAUG*CUA(PSU)C

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|A1|G|1882
8T3C|1|A1|A|1883
8T3C|1|A1|A|1884
8T3C|1|A1|U|1885
8T3C|1|A1|A|1886
8T3C|1|A1|A|1887
8T3C|1|A1|U|1888
8T3C|1|A1|G|1889
*
8T3C|1|A1|C|2346
8T3C|1|A1|U|2347
8T3C|1|A1|A|2348
8T3C|1|A1|PSU|2349
8T3C|1|A1|C|2350

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Ad

60S ribosomal protein L31-A