IL_8T3C_094

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3C_094 not in the Motif Atlas

Homologous match to IL_8C3A_101

Geometric discrepancy: 0.3212

The information below is about IL_8C3A_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76273.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

8T3C|1|A1|A|2441
8T3C|1|A1|G|2442
8T3C|1|A1|A|2443
*
8T3C|1|A1|U|2504
8T3C|1|A1|U|2505
8T3C|1|A1|U|2506

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain Ai

60S ribosomal protein L36-A

Chain BB

RPS1A isoform 1