IL_8T3C_097

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUGUAGAAUAAG*CUAC

Length

16 nucleotides

Bulged bases

8T3C|1|A1|U|2453, 8T3C|1|A1|G|2454, 8T3C|1|A1|A|2458, 8T3C|1|A1|U|2460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|A1|G|2452
8T3C|1|A1|U|2453
8T3C|1|A1|G|2454
8T3C|1|A1|U|2455
8T3C|1|A1|A|2456
8T3C|1|A1|G|2457
8T3C|1|A1|A|2458
8T3C|1|A1|A|2459
8T3C|1|A1|U|2460
8T3C|1|A1|A|2461
8T3C|1|A1|A|2462
8T3C|1|A1|G|2463
*
8T3C|1|A1|C|2492
8T3C|1|A1|U|2493
8T3C|1|A1|A|2494
8T3C|1|A1|C|2495

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

TSV IRES