IL_8T3C_108

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3C_108 not in the Motif Atlas

Homologous match to IL_8P9A_333

Geometric discrepancy: 0.1762

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8T3C|1|A1|U|2835
8T3C|1|A1|C|2836
8T3C|1|A1|A|2837
8T3C|1|A1|A|2838
8T3C|1|A1|G|2839
*
8T3C|1|A1|C|2849
8T3C|1|A1|G|2850
8T3C|1|A1|A|2851
8T3C|1|A1|C|2852
8T3C|1|A1|A|2853

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

Ubiquitin-60S ribosomal protein L40