IL_8T3C_182
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CGUAG(PSU)*AUCAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_182 not in the Motif Atlas
- Geometric match to IL_8ZA4_001
- Geometric discrepancy: 0.2517
- The information below is about IL_8ZA4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8T3C|1|B5|C|627
8T3C|1|B5|G|628
8T3C|1|B5|U|629
8T3C|1|B5|A|630
8T3C|1|B5|G|631
8T3C|1|B5|PSU|632
*
8T3C|1|B5|A|967
8T3C|1|B5|U|968
8T3C|1|B5|C|969
8T3C|1|B5|A|970
8T3C|1|B5|A|971
8T3C|1|B5|G|972
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: