IL_8T3C_187

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUUUGGUUC*GACCAUC

Length

16 nucleotides

Bulged bases

8T3C|1|B5|U|820, 8T3C|1|B5|A|850, 8T3C|1|B5|U|851

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|G|819
8T3C|1|B5|U|820
8T3C|1|B5|U|821
8T3C|1|B5|U|822
8T3C|1|B5|G|823
8T3C|1|B5|G|824
8T3C|1|B5|U|825
8T3C|1|B5|U|826
8T3C|1|B5|C|827
*
8T3C|1|B5|G|846
8T3C|1|B5|A|847
8T3C|1|B5|C|848
8T3C|1|B5|C|849
8T3C|1|B5|A|850
8T3C|1|B5|U|851
8T3C|1|B5|C|852

Current chains

Chain B5

18S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain BL

40S ribosomal protein S11-A