IL_8T3C_200

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGAGUAUGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3C|1|B5|G|1111
8T3C|1|B5|G|1112
8T3C|1|B5|A|1113
8T3C|1|B5|G|1114
8T3C|1|B5|U|1115
8T3C|1|B5|A|1116
8T3C|1|B5|U|1117
8T3C|1|B5|G|1118
8T3C|1|B5|G|1119
*
8T3C|1|B5|C|1128
8T3C|1|B5|U|1129
8T3C|1|B5|G|1130
8T3C|1|B5|A|1131
8T3C|1|B5|A|1132
8T3C|1|B5|A|1133
8T3C|1|B5|C|1134

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A

Chain BX

40S ribosomal protein S23-A