IL_8T3C_211
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8T3C|1|B5|C|1274, 8T3C|1|B5|U|1432, 8T3C|1|B5|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_211 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1902
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8T3C|1|B5|U|1272
8T3C|1|B5|G|1273
8T3C|1|B5|C|1274
8T3C|1|B5|A|1275
8T3C|1|B5|U|1276
8T3C|1|B5|G|1277
8T3C|1|B5|G|1278
*
8T3C|1|B5|U|1430
8T3C|1|B5|C|1431
8T3C|1|B5|U|1432
8T3C|1|B5|G|1433
8T3C|1|B5|U|1434
8T3C|1|B5|G|1435
8T3C|1|B5|A|1436
8T3C|1|B5|U|1437
8T3C|1|B5|G|1438
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BK
- 40S ribosomal protein S10-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain DC
- Elongation factor 2
- Chain EC
- TSV IRES
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