IL_8T3C_218
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AAAUAGU*ACUUCUU
- Length
- 14 nucleotides
- Bulged bases
- 8T3C|1|B5|A|1346, 8T3C|1|B5|U|1347, 8T3C|1|B5|U|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3C|1|B5|A|1344
8T3C|1|B5|A|1345
8T3C|1|B5|A|1346
8T3C|1|B5|U|1347
8T3C|1|B5|A|1348
8T3C|1|B5|G|1349
8T3C|1|B5|U|1350
*
8T3C|1|B5|A|1375
8T3C|1|B5|C|1376
8T3C|1|B5|U|1377
8T3C|1|B5|U|1378
8T3C|1|B5|C|1379
8T3C|1|B5|U|1380
8T3C|1|B5|U|1381
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- RPS20 isoform 1
Coloring options: