IL_8T3C_223
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GCCAGCGAGUCUAAC*GUAAUCUUGUGAAAC
- Length
- 30 nucleotides
- Bulged bases
- 8T3C|1|B5|U|1491, 8T3C|1|B5|A|1516, 8T3C|1|B5|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3C|1|B5|G|1480
8T3C|1|B5|C|1481
8T3C|1|B5|C|1482
8T3C|1|B5|A|1483
8T3C|1|B5|G|1484
8T3C|1|B5|C|1485
8T3C|1|B5|G|1486
8T3C|1|B5|A|1487
8T3C|1|B5|G|1488
8T3C|1|B5|U|1489
8T3C|1|B5|C|1490
8T3C|1|B5|U|1491
8T3C|1|B5|A|1492
8T3C|1|B5|A|1493
8T3C|1|B5|C|1494
*
8T3C|1|B5|G|1513
8T3C|1|B5|U|1514
8T3C|1|B5|A|1515
8T3C|1|B5|A|1516
8T3C|1|B5|U|1517
8T3C|1|B5|C|1518
8T3C|1|B5|U|1519
8T3C|1|B5|U|1520
8T3C|1|B5|G|1521
8T3C|1|B5|U|1522
8T3C|1|B5|G|1523
8T3C|1|B5|A|1524
8T3C|1|B5|A|1525
8T3C|1|B5|A|1526
8T3C|1|B5|C|1527
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: