IL_8T3C_225
3D structure
- PDB id
- 8T3C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3C_225 not in the Motif Atlas
- Homologous match to IL_8P9A_451
- Geometric discrepancy: 0.2347
- The information below is about IL_8P9A_451
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T3C|1|B5|G|1540
8T3C|1|B5|G|1541
8T3C|1|B5|G|1542
8T3C|1|B5|A|1543
8T3C|1|B5|U|1544
8T3C|1|B5|A|1545
*
8T3C|1|B5|U|1566
8T3C|1|B5|U|1567
8T3C|1|B5|C|1568
8T3C|1|B5|A|1569
8T3C|1|B5|A|1570
8T3C|1|B5|C|1571
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
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