IL_8T3C_250

3D structure

PDB id

8T3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8T3C|1|A1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3C_250 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.2755

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8T3C|1|A1|G|2828
8T3C|1|A1|U|2829
8T3C|1|A1|G|2830
*
8T3C|1|A1|U|2858
8T3C|1|A1|U|2859
8T3C|1|A1|U|2860
8T3C|1|A1|U|2861
8T3C|1|A1|U|2862

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AI

60S ribosomal protein L10