IL_8T3D_043
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AGA*UAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_043 not in the Motif Atlas
- Homologous match to IL_8P9A_270
- Geometric discrepancy: 0.1116
- The information below is about IL_8P9A_270
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8T3D|1|A1|A|1009
8T3D|1|A1|G|1010
8T3D|1|A1|A|1011
*
8T3D|1|A1|U|1039
8T3D|1|A1|A|1040
8T3D|1|A1|U|1041
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- RPL5 isoform 1
- Chain AI
- 60S ribosomal protein L10
Coloring options: