IL_8T3D_059
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8T3D|1|A1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_059 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0775
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8T3D|1|A1|U|1388
8T3D|1|A1|G|1389
8T3D|1|A1|A|1390
8T3D|1|A1|C|1391
8T3D|1|A1|G|1392
8T3D|1|A1|A|1393
8T3D|1|A1|A|1394
8T3D|1|A1|G|1395
*
8T3D|1|A1|U|1415
8T3D|1|A1|C|1416
8T3D|1|A1|G|1417
8T3D|1|A1|A|1418
8T3D|1|A1|A|1419
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AE
- 60S ribosomal protein L6-A
- Chain AP
- 60S ribosomal protein L17-A
- Chain AY
- 60S ribosomal protein L26-A
- Chain Ae
- RPL32 isoform 1
Coloring options: